Dr. TSUYOSHI TERAKAWA

The condensin complex is a mechanichemical motor that translocates along DNA

Terakawa T*, Bisht S*, Eeftens J*, Dekker C, Haering C, Greene EC

Science (2017) 358:672 *equal contribution

 

Sequential eviction of crowded nucleoprotein complexes by the RecBCD molecular motor

Terakawa T, Redding S, Silverstein TD, Greene EC 

Proc Natl Acad Sci U S A  (2017)  114:E6322

 

How one-dimensional diffusion of transcription factors are affected by obstacles: Coarse-grained molecular dynamics study

Saito M, Terakawa T, Takada S

Mol Simul (2017) 43:1315

 

Dynamic coupling among protein binding, sliding, and DNA bending revealed by molecular dynamics

Tan C, Terakawa T, Takada S

J Am Chem Soc (2016) 138:8512

 

p53 dynamics upon response element recognition explored by molecular simulations

Terakawa T, Takada S

Sci Rep (2015) 5:17107

 

Modeling structural dynamics of biomolecular complexes by coarse-grained molecular simulations

Takada S, Kanada R, Tan C, Terakawa T, Li W, Kenzaki H

Acc Chem Res (2015) 48:302

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Base triplet stepping by the Rad51/RecA family of recombinases

Lee JY, Terakawa T*, Qi Z*, Steinfeld JB, Redding S, Kwon Y, Gaines WA, Zhao W, Sung P, Greene EC

Science (2015) 349:977 *equal contribution

 

Multi-scale ensemble modeling of modular proteins with intrinsically disordered linker regions: application to p53

Terakawa T, Higo J, Takada S

Biophys J (2014) 107:721

 

RESPAC: Method to determine partial charges in coarse-grained protein model and its application to DNA-binding proteins

Terakawa T, Takada S

J Chem Theory Comput (2014) 10:711

 

p53 searches on DNA by rotation-uncoupled sliding at C-terminal tails and restricted hopping of core domains

Terakawa T, Kenzaki H, Takada S

J Am Chem Soc (2012) 134:14555

 

Energy landscape and multiroute folding of topologically complex proteins adenylate kinase and 2ouf-knot

Li W, Terakawa T, Whang W, Takada S

Proc Natl Acad Sci U S A (2012) 109:17789

 

Multiscale ensemble modeling of intrinsically disordered proteins: p53 N-terminal domain

Terakawa T, Takada S

Biophys J (2011) 101:1450

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On easy implementation of a variant of the replica exchange with solute tempering in GROMACS

Terakawa T , Kameda T, Takada S

J Comput Chem (2011) 32:1228